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GenMAPP 2.0 Feature List
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| Program Components |
Database Specifications |
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GenMAPP executable progam |
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Gene
databases updated on a quarterly basis |
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MAPPFinder,
MAPPBuilder, and Converter modules |
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Species-specific
databases for 10 supported species (Human,
Mouse, Rat, Drosophila, Worm, Yeast, Zebrafish,
Dog, Cattle and Chicken) |
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Downloader
function for retrieving |
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Integration
of many gene systems and annotations, including
model organism database systems, Affymetrix,
Unigene, RefSeq, Entrez, InterPro, UniProt,
Pfam, EMBL, HUGO, InterPro) |
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Automatic
program update feature |
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Integrated
Help documentation |
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Gene
databases can be modified or created from
scratch by user |
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Drafting
tools menu for MAPP creation |
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MAPPBuilder
automatic MAPP creation from list of genes |
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Vector
based pathway objects |
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GenMAPP
v.1.0 conversion utilities |
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User-defined
criteria for coloring and display |
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Mode
for displaying multiple conditions concurrently |
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Expression
Dataset Manager for importing data JPG, BMP,
and HTML MAPP and MAPP set export options
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Web-ready
browsable MAPP archive export |
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MAPPFinder
analysis |
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MAPPFinder 2.0 Feature List |
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Rank
Gene Ontology terms by their association with
user datasets |
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Export
GO term MAPPs matching user-defined filter
criterion (numerical, keyword, gene ID) |
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Browsable
hierarchical Gene Ontology tree |
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Search
for gene/protein IDs or any GO term |
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"On
the fly" generation of Gene Ontology
MAPPs based on user expression data |
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Automatic
export of MAPPFinder results as a tab-delimited
text file |
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Calculate
Z-scores and p-values for user-defined criteria |
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Re-visualization
of computed results |
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MAPPBuilder 2.0 Feature List
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Import lists of gene/protein IDs for MAPP creation |
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Compatible with any existing GenMAPP gene ID system or custom ID system |
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Generate mutliple MAPPs with a single run |
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